Installation

1. Clone this repository:

git clone git@github.com:PMBio/deeprvat.git

1. Change directory to the repository: cd deeprvat

2. Install the conda environment. We recommend using mamba, though you may also replace mamba with conda

   Note: the current deeprvat env does not support cuda when installed with conda. Install using mamba for cuda support.

mamba env create -n deeprvat -f deeprvat_env.yaml 

1. Activate the environment: mamba activate deeprvat

2. Install the deeprvat package: pip install -e .

If you don’t want to install the GPU-related requirements, use the deeprvat_env_no_gpu.yml environment instead.

mamba env create -n deeprvat -f deeprvat_env_no_gpu.yaml