`deeprvat.deeprvat.common_variant_condition_utils`

Module Contents

Functions

`cli`
`get_significant_genes`
`prepare_genotypes_per_gene`

Data

`compression_level`
`logger`

API

deeprvat.deeprvat.common_variant_condition_utils.compression_level = 1

deeprvat.deeprvat.common_variant_condition_utils.logger = 'getLogger(...)'

deeprvat.deeprvat.common_variant_condition_utils.cli()

deeprvat.deeprvat.common_variant_condition_utils.get_significant_genes(alpha, pval_correction_method, debug, config_file, res_file, out_parquet, out_gene_ids)

deeprvat.deeprvat.common_variant_condition_utils.prepare_genotypes_per_gene(standardize: bool, gtf_file: str, padding: int, sample_file: str, sig_gene_file: str, genotype_file, config_file: str, out_dir: str)