DeepRVAT

Contents:

  • Installation
  • Quick start
  • Modes of usage
  • DeepRVAT preprocessing pipeline
  • DeepRVAT annotation pipeline
  • Seed gene discovery
  • DeepRVAT configuration and input data
  • Association testing with precomputed gene impairment scores
  • Association testing using pretrained DeepRVAT models
  • Training and association testing
  • Output file formats
  • Cluster execution
  • Practical recommendations for training
  • Applying DeepRVAT to UK Biobank data
  • API Reference
    • deeprvat
      • Subpackages
        • deeprvat.deeprvat
        • deeprvat.seed_gene_discovery
        • deeprvat.annotations
        • deeprvat.preprocessing
        • deeprvat.data
      • Submodules
DeepRVAT
  • API Reference
  • deeprvat
  • deeprvat.deeprvat
  • View page source

deeprvat.deeprvat

Submodules

  • deeprvat.deeprvat.evaluate
  • deeprvat.deeprvat.common_variant_condition_utils
  • deeprvat.deeprvat.associate
  • deeprvat.deeprvat.train
  • deeprvat.deeprvat.models
  • deeprvat.deeprvat.config
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© Copyright 2026, Clarke, B., Holtkamp, E., Öztürk, H., Mück, M., Wahlberg, M., Meyer, K., Munzlinger, F., Brechtmann, F., Hölzlwimmer, F., Gagneur, J., Stegle, O..

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